Spatial Omics Living Review

Navigate the spatial omics methods and dataset landscape

A curated, graph-based living review of computational methods and datasets. Updated continuously — not a snapshot.

—Papers
—Comp. Methods
—Curated
—Datasets
—SP Datasets
—ST Datasets
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Methods Book
A structured narrative of the spatial omics computational methods landscape.
Hover to explore →
Methods Book
From preprocessing to cell-cell communication — written context behind the graph, authored during a PhD in spatial omics.
Open book →
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Methods
Search and filter computational methods by pipeline step or publication.
— methods indexed
Methods Browser
Filter by pipeline step — preprocessing, segmentation, niche analysis, SVGs, CCC. See benchmarking relationships.
Browse methods →
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Datasets
Curated spatial omics datasets with tissue, disease, organism and marker metadata.
— datasets indexed
Dataset Registry
Find datasets by tissue, disease, organism or technology. Download links — no data hosted here.
Browse datasets →
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Methods Graph
Interactive graph showing benchmarking relationships — who compared against whom, on what data.
Click nodes to explore
Explore the Graph
Methods grouped by pipeline step. Edges show comparisons. Toggle dataset connections.
Open graph →
Methods Browser
ID Name Pipeline Stage Year Journal Citations Comparisons Datasets Status
Dataset Registry
ID Name Modality Technology Organism Tissue Disease Patients Images Year Features Markers Access
Application Papers
ID Title Year Journal Modality Datasets Status
Methods Graph
Applications Graph

Application papers have no pipeline category, so position here is based only on title/abstract embedding similarity, not a category layout like the Methods Graph.

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